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This course will introduce students to beginner to intermediate level biological data analysis. We will cover the basics of sequence data types, how to interpret the files and associated metadata, and analyze the data using python. This course builds on the data science and python concepts taught in the data science pass.
Duration
3 hours
Difficulty
professional
INE's world-class IT trainingInstructor for this course
Adriana Patterson
Data Science
This course is composed by the following modules
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Module 1
Welcome1 video
Introduction
Module 2
Data Organization5 videos
Seq Objects
SeqRecord Objects
SeqFeature Objects - Part 1
SeqFeature Objects - Part 2
Writing and Converting Sequence Files in Biopython
Module 3
Data Acquisition1 video
Retrieving Data from NCBI
Module 4
Data Analysis2 videos
Multiple Sequence Alignments
Reading Alignments
Module 5
Final Project4 videos
Final Project 1: Build a Genomic Features Summary Calculator
Building genomic features summary calculator
Final Project 2: Build an Alignment Features Summary Calculator
Building an alignment features summary calculator
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